Workshop Series

Hands-on spatial gene expression
bioinformatics workshop

In partnership with University of Calgary's Advanced Spatial Omics Core (ASOC)

Join us for a two-day workshop series on spatial data analysis with Visium HD and Xenium. Together, we’ll explore how to process, visualize, and interpret spatial gene expression data to unlock new biological insights.

Day 1: Visium HD Bioinformatics Workshop

Date:October 28, 2025

Time:9:00 AM–4:00 PM

Location:University of Calgary, Health Sciences Centre, Room 1500
Learn how to analyze Visium HD Spatial Gene Expression data from start to finish. We’ll walk through data processing on the 10x Cloud, explore quality metrics with the summary from Space Ranger, and dive into Loupe Browser for cell-type mapping and visualization. You’ll also learn how to get started in using community tools for deeper biological insights from Visium HD data.

Day 2: Xenium Bioinformatics Workshop

Date:October 29, 2025

Time:9:00 AM–4:00 PM

Location:University of Calgary, Health Sciences Centre, Room 1501
Explore the Xenium In Situ Gene Expression data analysis journey from thoughtful panel design to publication quality figures. We’ll cover tools from 10x Genomics and the broader community, showing you how to assess data quality, annotate cell types, integrate multiple samples, and uncover biological insights.

By the end of both workshops, you’ll have a solid foundation for analyzing spatial data with Visium and Xenium.

Featuring